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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKU13732.1ABC subunit of A-band LPS efflux transporter. (325 aa)    
Predicted Functional Partners:
AKU13733.1
ABC transporter.
 
  
 0.983
AKU13554.1
Hypothetical protein.
 
  
 0.973
AKU13555.1
Hypothetical protein.
  
 
 
0.926
AKU12088.1
Putative ABC-2 type transport system permease protein.
  
 
 0.772
AKU14322.1
ABC-2 type transporter.
  
 
 0.680
AKU13718.1
Glycosyltransferase.
 
 
 0.628
AKU10293.1
Lipooligosaccharide transport system permease protein.
  
 
 0.610
AKU10557.1
ABC-2 type transporter permase, antibiotic transport system permease protein.
  
 
 0.610
AKU10993.1
ABC-2 type transporter permase, antibiotic transport system permease protein.
  
 
 0.610
AKU11612.1
ABC-2 type transporter.
  
 
 0.606
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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