Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13779.1Twitching motility transmembrane protein. (711 aa)    
Predicted Functional Partners:
AKU13780.1
Pili chemotaxis protein similar.
 
 0.994
AKU13778.1
Twitching motility protein.
 
 0.992
AKU13776.1
Type IV pilus response regulator.
 
 0.990
AKU13777.1
Type IV pilus response regulator.
 
 0.986
AKU12236.1
CheA signal transduction histidine kinase.
 
 0.967
AKU11977.1
Two-component system, chemotaxis family, sensor kinase.
 
 0.925
AKU13049.1
Two-component system, chemotaxis family, sensor kinase.
 
 0.923
AKU13052.1
Chemotaxis protein CheV-like.
 
 0.906
AKU13053.1
Chemotaxis protein CheV-like.
 
 0.902
AKU12239.1
Chemotaxis protein CheR.
 
 0.864
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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