Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13797.1Putative regulator protein. (378 aa)    
Predicted Functional Partners:
AKU13618.1
Signal transduction protein.
 
     0.855
AKU13796.1
CDP-6-deoxy-delta-3,4-glucoseen reductase.
       0.806
AKU11749.1
Granule-associated protein.
  
     0.682
AKU13795.1
NAD-dependent epimerase/dehydratase.
       0.584
AKU13794.1
Hypothetical protein.
       0.578
AKU11667.1
Hypothetical protein.
 
     0.577
AKU11665.1
Hypothetical protein.
  
     0.576
AKU11666.1
Hypothetical protein.
  
     0.573
AKU11131.1
Hypothetical protein.
  
     0.570
AKU13053.1
Chemotaxis protein CheV-like.
 
     0.555
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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