Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKU13806.1HlyD family secretion protein. (472 aa)    
Predicted Functional Partners:
AKU13807.1
ABC transporter ATP-binding/permease.
 
 0.983
AKU13801.1
Hypothetical protein.
 
 0.961
AKU13804.1
Hypothetical protein.
 
     0.849
AKU13802.1
Hypothetical protein.
 
  
 0.792
AKU13803.1
Hypothetical protein.
 
  
 0.768
AKU13805.1
LuxR family transcriptional regulator.
 
  
 0.728
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.691
AKU13739.1
Type I secretion outer membrane protein, TolC family.
  
 0.674
AKU14325.1
Outer membrane efflux protein.
  
 0.674
AKU10324.1
Outer membrane adhesin like protein.
 
  
 0.672
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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