Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13838.1Hypothetical protein. (115 aa)    
Predicted Functional Partners:
AKU13839.1
High-affinity iron permease.
 
   
 0.941
AKU13840.1
Putative nitrogen fixation protein.
 
  
 0.939
AKU13836.1
Hypothetical protein.
 
   
 0.915
AKU11996.1
Polyferredoxin.
 
  
 0.776
AKU13837.1
Hypothetical protein.
 
     0.718
AKU13841.1
Isoquinoline 1-oxidoreductase, alpha subunit.
       0.480
AKU13842.1
Isoquinoline 1-oxidoreductase, beta subunit.
       0.477
AKU10161.1
Putative multicupper oxidase.
   
 
 0.434
AKU14047.1
Bilirubin oxidase.
   
 
 0.434
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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