Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13852.1Hypothetical protein. (111 aa)    
Predicted Functional Partners:
AKU13851.1
Putative cytochrome c.
       0.779
AKU14084.1
Hypothetical protein.
  
     0.659
AKU10075.1
Putative lipoprotein.
  
     0.643
AKU14566.1
Hypothetical protein.
  
     0.638
AKU13853.1
Hypothetical protein.
       0.619
AKU11227.1
Hypothetical protein.
  
     0.613
AKU13849.1
Branched-chain amino acid ABC transporter.
 
     0.604
AKU13854.1
Two-component system, OmpR family, heavy metal sensor histidine kinase CusS; Member of a two-component regulatory system.
       0.599
AKU13855.1
Two-component heavy metal response transcriptional regulator, winged helix family.
       0.590
AKU13965.1
Hypothetical protein.
  
     0.565
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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