Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU13893.1Hypothetical protein. (442 aa)    
Predicted Functional Partners:
AKU13894.1
Transcriptional regulator, LysR family.
 
     0.941
AKU13896.1
Hypothetical protein.
 
  
 0.892
AKU13895.1
RND superfamily exporter.
 
  
 0.890
AKU14415.1
Cox2 cytochrome oxidase subunit 2.
 
     0.772
AKU11708.1
Hypothetical protein.
 
     0.762
AKU10055.1
Hypothetical protein.
  
     0.741
AKU11709.1
RND superfamily exporter.
 
  
 0.716
AKU14021.1
Hypothetical protein.
 
  
 0.712
AKU14416.1
Hypothetical protein.
 
  
 0.707
AKU14417.1
Hypothetical protein.
 
  
 0.705
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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