Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AKU13957.1phenylacetate-CoA ligase. (410 aa)    
Predicted Functional Partners:
AKU13958.1
ABC-type branched-chain amino acid transport system, ATPase component.
 
    0.865
AKU13959.1
Hypothetical protein.
 
    0.855
AKU13960.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.833
AKU13963.1
Long-chain acyl-CoA synthetase.
 
    0.827
AKU13962.1
Branched-chain amino acid ABC transporter, ATP-binding protein.
 
    0.816
AKU13961.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.811
AKU13956.1
acyl-CoA transferase; Belongs to the CoA-transferase III family.
  
    0.575
AKU12394.1
AMP-dependent synthetase and ligase.
 
    0.447
AKU13948.1
Indolepyruvate ferredoxin oxidoreductase.
 
  
 0.438
AKU13623.1
Indolepyruvate ferredoxin oxidoreductase.
 
  
 0.432
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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