Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU14046.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 0.973
AKU14045.1
DNA polymerase III, epsilon subunit.
     
 0.730
AKU13211.1
Hypothetical protein.
  
     0.666
AKU10955.1
Cache sensor protein.
  
     0.635
AKU10052.1
Hypothetical protein.
  
     0.614
AKU10589.1
Hypothetical protein.
  
     0.607
AKU11875.1
Hypothetical protein.
  
 
 0.577
AKU10367.1
Hypothetical protein.
  
     0.570
AKU10810.1
Hypothetical protein.
 
     0.539
AKU13385.1
Hypothetical protein.
 
     0.538
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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