Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AKU14060.1Type IV fimbrial biogenesis protein. (190 aa)    
Predicted Functional Partners:
AKU14061.1
Type IV fimbrial biogenesis protein.
 
 
 0.998
AKU14059.1
Fimbrial type-IV assembly protein PilO.
 
 
 0.997
AKU14058.1
Type IV fimbrial biogenesis protein.
 
  
 0.994
AKU14057.1
Type IV fimbrial biogenesis protein.
 
 
 0.990
AKU09947.1
Hypothetical protein.
  
 
   0.902
AKU10086.1
General secretion pathway protein M.
  
 
 0.891
AKU13006.1
Type IV pilus assembly protein PilE.
 
  
 0.816
AKU10088.1
Type II and III secretion system protein; Belongs to the bacterial secretin family.
  
 
 0.805
AKU13239.1
General secretion pathway protein D.
  
 
 0.805
AKU12933.1
Hypothetical protein.
  
  
 0.803
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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