Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AKU10916.1 | AKU14298.1 | AzCIB_1011 | AzCIB_4405 | AMP-dependent synthetase and ligase. | Hypothetical protein. | 0.679 |
AKU10916.1 | polA | AzCIB_1011 | AzCIB_0490 | AMP-dependent synthetase and ligase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.759 |
AKU12890.1 | AKU14298.1 | AzCIB_2997 | AzCIB_4405 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Hypothetical protein. | 0.746 |
AKU12890.1 | polA | AzCIB_2997 | AzCIB_0490 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.512 |
AKU12890.1 | secB | AzCIB_2997 | AzCIB_0874 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Preprotein translocase subunit; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.940 |
AKU12890.1 | secE | AzCIB_2997 | AzCIB_4052 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. | 0.998 |
AKU12890.1 | secY | AzCIB_2997 | AzCIB_4019 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.996 |
AKU12890.1 | yidC | AzCIB_2997 | AzCIB_4736 | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Preprotein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.994 |
AKU14295.1 | AKU14296.1 | AzCIB_4402 | AzCIB_4403 | IS66 family element, orf1. | IS66 Orf2 family protein. | 0.600 |
AKU14295.1 | AKU14297.1 | AzCIB_4402 | AzCIB_4404 | IS66 family element, orf1. | Transposase IS66. | 0.467 |
AKU14295.1 | AKU14298.1 | AzCIB_4402 | AzCIB_4405 | IS66 family element, orf1. | Hypothetical protein. | 0.449 |
AKU14296.1 | AKU14295.1 | AzCIB_4403 | AzCIB_4402 | IS66 Orf2 family protein. | IS66 family element, orf1. | 0.600 |
AKU14296.1 | AKU14297.1 | AzCIB_4403 | AzCIB_4404 | IS66 Orf2 family protein. | Transposase IS66. | 0.904 |
AKU14296.1 | AKU14298.1 | AzCIB_4403 | AzCIB_4405 | IS66 Orf2 family protein. | Hypothetical protein. | 0.587 |
AKU14297.1 | AKU14295.1 | AzCIB_4404 | AzCIB_4402 | Transposase IS66. | IS66 family element, orf1. | 0.467 |
AKU14297.1 | AKU14296.1 | AzCIB_4404 | AzCIB_4403 | Transposase IS66. | IS66 Orf2 family protein. | 0.904 |
AKU14297.1 | AKU14298.1 | AzCIB_4404 | AzCIB_4405 | Transposase IS66. | Hypothetical protein. | 0.779 |
AKU14298.1 | AKU10916.1 | AzCIB_4405 | AzCIB_1011 | Hypothetical protein. | AMP-dependent synthetase and ligase. | 0.679 |
AKU14298.1 | AKU12890.1 | AzCIB_4405 | AzCIB_2997 | Hypothetical protein. | Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.746 |
AKU14298.1 | AKU14295.1 | AzCIB_4405 | AzCIB_4402 | Hypothetical protein. | IS66 family element, orf1. | 0.449 |
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