Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU14300.1Outer membrane protein. (458 aa)    
Predicted Functional Partners:
AKU10657.1
Hypothetical protein.
 
 
 
 0.806
bamD
Competence lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.744
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.741
AKU13130.1
Hypothetical protein.
   
 
 0.730
AKU13631.1
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA.
    
 
 0.716
AKU14044.1
Peptidylprolyl isomerase.
    
 
 0.716
AKU13040.1
Hypothetical protein.
 
     0.668
AKU13965.1
Hypothetical protein.
 
  
 0.608
AKU13095.1
Hypothetical protein.
  
     0.590
AKU11013.1
Hypothetical protein.
  
     0.588
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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