Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU14423.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
AKU14424.1
Lytic transglycosylase.
 
     0.948
AKU14425.1
Integrating conjugative element protein, PFL_4693 family.
 
     0.948
AKU14427.1
Hypothetical protein.
 
     0.948
AKU14421.1
Membrane protein.
 
     0.932
AKU14422.1
Hypothetical protein.
 
     0.932
AKU14353.1
Hypothetical protein.
 
     0.785
AKU14355.1
Hypothetical protein.
 
     0.785
AKU14342.1
Hypothetical protein.
 
    0.784
AKU14426.1
Hypothetical protein.
       0.784
AKU12480.1
Hypothetical protein.
 
     0.783
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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