Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU14451.1Hypothetical protein. (255 aa)    
Predicted Functional Partners:
AKU14449.1
ssDNA-binding protein.
 
   
 0.885
AKU14448.1
DNA topoisomerase III.
 
   
 0.851
AKU14453.1
Hypothetical protein.
 
   
 0.841
AKU14454.1
Hypothetical protein.
 
     0.834
AKU14455.1
Hypothetical protein.
 
   
 0.833
AKU14457.1
Chromosome partitioning protein.
 
     0.830
AKU14458.1
Phage transcriptional regulator, AlpA.
 
     0.791
AKU14347.1
Hypothetical protein.
  
    0.784
AKU12455.1
Hypothetical protein.
 
   
 0.783
AKU12472.1
Hypothetical protein.
  
    0.781
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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