AKU14501.1 protein (Azoarcus sp. CIB) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AKU14501.1

Hypothetical protein. (220 aa)

Predicted Functional Partners:

AKU14499.1

0.978

AKU14500.1

0.978

AKU13357.1

0.901

AKU13646.1

0.901

AKU10793.1

0.900

AKU13356.1

0.823

AKU13645.1

0.823

AKU13358.1

0.759

AKU13647.1

0.759

AKU13821.1

0.663

Your Current Organism:

Azoarcus sp. CIB

NCBI taxonomy Id: 198107
Other names: A. sp. CIB

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKU10793.1	AKU13357.1	AzCIB_0888	AzCIB_3464	Tripartite ATP-independent periplasmic transporter DctQ.	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	0.905
AKU10793.1	AKU13646.1	AzCIB_0888	AzCIB_3753	Tripartite ATP-independent periplasmic transporter DctQ.	C4-dicarboxylate transport system permease, small subunit.	0.905
AKU10793.1	AKU14500.1	AzCIB_0888	AzCIB_4614	Tripartite ATP-independent periplasmic transporter DctQ.	C4-dicarboxylate uptake permease.	0.412
AKU10793.1	AKU14501.1	AzCIB_0888	AzCIB_4615	Tripartite ATP-independent periplasmic transporter DctQ.	Hypothetical protein.	0.900
AKU13356.1	AKU13357.1	AzCIB_3463	AzCIB_3464	TRAP-T family transporter, large inner membrane subunit DctM.	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	0.997
AKU13356.1	AKU13358.1	AzCIB_3463	AzCIB_3465	TRAP-T family transporter, large inner membrane subunit DctM.	TRAP-T family transporter, DctP subunit.	0.993
AKU13356.1	AKU13646.1	AzCIB_3463	AzCIB_3753	TRAP-T family transporter, large inner membrane subunit DctM.	C4-dicarboxylate transport system permease, small subunit.	0.851
AKU13356.1	AKU13647.1	AzCIB_3463	AzCIB_3754	TRAP-T family transporter, large inner membrane subunit DctM.	C4-dicarboxylate-binding periplasmic protein.	0.899
AKU13356.1	AKU14499.1	AzCIB_3463	AzCIB_4613	TRAP-T family transporter, large inner membrane subunit DctM.	Dicarboxylate transport protein.	0.857
AKU13356.1	AKU14501.1	AzCIB_3463	AzCIB_4615	TRAP-T family transporter, large inner membrane subunit DctM.	Hypothetical protein.	0.823
AKU13357.1	AKU10793.1	AzCIB_3464	AzCIB_0888	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	Tripartite ATP-independent periplasmic transporter DctQ.	0.905
AKU13357.1	AKU13356.1	AzCIB_3464	AzCIB_3463	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	TRAP-T family transporter, large inner membrane subunit DctM.	0.997
AKU13357.1	AKU13358.1	AzCIB_3464	AzCIB_3465	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	TRAP-T family transporter, DctP subunit.	0.995
AKU13357.1	AKU13645.1	AzCIB_3464	AzCIB_3752	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	C4-dicarboxylate transport system permease, large subunit.	0.897
AKU13357.1	AKU13646.1	AzCIB_3464	AzCIB_3753	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	C4-dicarboxylate transport system permease, small subunit.	0.915
AKU13357.1	AKU13647.1	AzCIB_3464	AzCIB_3754	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	C4-dicarboxylate-binding periplasmic protein.	0.856
AKU13357.1	AKU13821.1	AzCIB_3464	AzCIB_3928	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	malonyl-CoA decarboxylase.	0.637
AKU13357.1	AKU14499.1	AzCIB_3464	AzCIB_4613	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	Dicarboxylate transport protein.	0.824
AKU13357.1	AKU14500.1	AzCIB_3464	AzCIB_4614	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	C4-dicarboxylate uptake permease.	0.895
AKU13357.1	AKU14501.1	AzCIB_3464	AzCIB_4615	TRAP-T family transporter, periplasmic ligand binding protein, DctQ.	Hypothetical protein.	0.901