Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU14519.1Hypothetical protein. (155 aa)    
Predicted Functional Partners:
AKU14518.1
Benzoate--CoA ligase.
 
     0.862
boxC
Benzoyl-CoA-dihydrodiol lyase.
 
     0.838
AKU14517.1
Putative ABC transporter.
 
     0.837
boxB
Benzoyl-CoA oxygenase component B.
 
     0.826
boxR
Transcriptional regulator; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
     0.817
boxA
Benzoyl-CoA oxygenase component A.
 
     0.815
bzdR
BzdR; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
     0.754
AKU11518.1
Putative ABC transporter subunit.
  
     0.726
AKU14381.1
Putative 3-methylbenzoate transporter periplasmic subunit.
  
     0.721
boxD
3,4-dehydroadipyl-CoA semialdehyde dehydrogenase.
 
     0.693
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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