Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU14554.1GPW/gp25 family protein. (129 aa)    
Predicted Functional Partners:
AKU14545.1
Putative tail sheath protein.
 
 
 0.997
AKU14551.1
Hypothetical protein.
 
 
 0.997
AKU14558.1
Hypothetical protein.
 
 
 0.993
AKU14549.1
Hypothetical protein.
 
 
 0.988
AKU14555.1
Hypothetical protein.
 
 
 0.987
AKU14556.1
Hypothetical protein.
 
 
 0.985
AKU14546.1
Putative phage tail protein.
 
 
 0.981
AKU14548.1
Hypothetical protein.
 
 
 0.981
AKU14552.1
Hypothetical protein.
 
  
 0.955
AKU14547.1
Hypothetical protein.
 
     0.898
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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