Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKU14563.1Hypothetical protein. (333 aa)    
Predicted Functional Partners:
AKU14561.1
Hypothetical protein.
       0.782
AKU14562.1
Hypothetical protein.
       0.782
AKU14564.1
Hypothetical protein.
      0.773
AKU14560.1
Hypothetical protein.
       0.736
AKU14559.1
Hypothetical protein.
       0.718
AKU14565.1
ATPase AAA.
       0.495
AKU14566.1
Hypothetical protein.
       0.489
AKU14558.1
Hypothetical protein.
       0.449
Your Current Organism:
Azoarcus sp. CIB
NCBI taxonomy Id: 198107
Other names: A. sp. CIB
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