STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SF0314Putative phage integrase; Code: L; COG: COG0582; Belongs to the 'phage' integrase family. (387 aa)    
Predicted Functional Partners:
yfeC
tRNA-Ala; Codon recognized: GCC; To E.coli YfiI and P.aeruginosa RluD.
  
  
 0.828
yqjI
tRNA-Met; Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789450 (255 aa). BLAST with identity of 99% in 248 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
   
  
 0.809
SF0313
IS600 ORF1; Code: L; COG: COG2963.
       0.503
fimB
Recombinase; Code: L; COG: COG0582.
  
   
 0.486
fimE
Recombinase; FimE is one of the 2 regulatory proteins which control the phase variation of type 1 fimbriae in E.coli. These proteins mediate the periodic inversion of a 300bp DNA segment that harbors the promoter for the fimbrial structural gene, fimA. FimE switches fimA off (By similarity).
  
   
 0.471
SF0312
IS600 ORF2; Code: L; COG: COG2801.
       0.438
Your Current Organism:
Shigella flexneri
NCBI taxonomy Id: 198214
Other names: S. flexneri 2a str. 301, Shigella flexneri 2a str. 301, Shigella flexneri serotype 2a str. 301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.