STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccXConserved hypothetical protein; Code: C; COG: COG1254. (92 aa)    
Predicted Functional Partners:
pta
Phosphotransacetylase; Involved in acetate metabolism; In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.918
ackA
Acetate kinase; Code: C; COG: COG0282.
     
 0.909
aldB
Aldehyde dehydrogenase B (lactaldehyde dehydrogenase); Code: C; COG: COG1012; Belongs to the aldehyde dehydrogenase family.
     
 0.904
poxB
Pyruvate oxidase; Code: EH; COG: COG0028; Belongs to the TPP enzyme family.
     
  0.900
rlmI
Putative oxidoreductase; Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA.
     
 0.606
yccV
Conserved hypothetical protein; Involved in the degradation of certain denaturated proteins, including DnaA, during heat shock stress; Belongs to the HspQ family.
       0.547
maeB
Putative multimodular enzyme.
     
 0.469
Your Current Organism:
Shigella flexneri
NCBI taxonomy Id: 198214
Other names: S. flexneri 2a str. 301, Shigella flexneri 2a str. 301, Shigella flexneri serotype 2a str. 301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.