STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhFConserved hypothetical protein; Code: R; COG: COG0656. (298 aa)    
Predicted Functional Partners:
ydhL
Conserved hypothetical protein; Code: R; COG: COG3313.
       0.626
yqhE
Conserved hypothetical protein; Code: R; COG: COG0656.
  
     0.623
ydjG
Conserved hypothetical protein; Code: C; COG: COG0667.
  
     0.610
sodC
Superoxide dismutase(Cu-Zn); Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787933 (671 aa). BLAST with identity of 98% in 670 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.
  
    0.592
SF1676
Conserved hypothetical protein; Code: K; COG: COG1309.
       0.469
treC
Trehalase 6-P hydrolase; Code: G; COG: COG0366.
  
     0.429
nemA
N-ethylmaleimide reductase; Code: C; COG: COG1902.
       0.405
Your Current Organism:
Shigella flexneri
NCBI taxonomy Id: 198214
Other names: S. flexneri 2a str. 301, Shigella flexneri 2a str. 301, Shigella flexneri serotype 2a str. 301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.