STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN48317.1Hypothetical protein. (354 aa)    
Predicted Functional Partners:
SHN53772.1
Hypothetical protein.
  
     0.715
SHN48314.1
Mechanosensitive ion channel.
 
     0.672
SHN48315.1
Cystathionine beta-lyase.
       0.620
SHN48316.1
Thiosulfate/3-mercaptopyruvate sulfurtransferase.
       0.620
SHN53552.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.577
SHN48580.1
Transcriptional regulator, TetR family.
  
     0.570
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily.
       0.555
SHN56544.1
Autotransporter secretion inner membrane protein TamB.
  
     0.546
SHN49923.1
Hypothetical protein.
  
     0.534
SHN63430.1
Hypothetical protein.
  
     0.534
Your Current Organism:
Porphyrobacter sanguineus
NCBI taxonomy Id: 198312
Other names: ATCC 25659, Agrobacterium sanguineum, DSM 11032, IAM 12620, ICPB 4167, IFO 15763, JCM 20691, NBRC 15763, P. sanguineus, strain A91
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