STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN48375.1Predicted N-acetyltransferase YhbS. (202 aa)    
Predicted Functional Partners:
SHN48376.1
Glucose/arabinose dehydrogenase, beta-propeller fold.
       0.800
SHN60561.1
Hypothetical protein.
  
     0.671
SHN50942.1
TolA-binding protein.
  
     0.666
SHN48372.1
poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.656
SHN48373.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
       0.656
SHN48374.1
Hypothetical protein.
       0.656
SHN64549.1
Hypothetical protein.
  
     0.594
SHN52597.1
Hypothetical protein.
  
     0.567
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.565
SHN53772.1
Hypothetical protein.
  
     0.556
Your Current Organism:
Porphyrobacter sanguineus
NCBI taxonomy Id: 198312
Other names: ATCC 25659, Agrobacterium sanguineum, DSM 11032, IAM 12620, ICPB 4167, IFO 15763, JCM 20691, NBRC 15763, P. sanguineus, strain A91
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.