Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHN49792.1 | SHN53172.1 | SAMN02745193_00409 | SAMN02745193_00952 | Thioredoxin; Belongs to the thioredoxin family. | 1-Cys peroxiredoxin. | 0.412 |
SHN49792.1 | SHN57483.1 | SAMN02745193_00409 | SAMN02745193_01647 | Thioredoxin; Belongs to the thioredoxin family. | Glutamate synthase (NADH) large subunit. | 0.797 |
SHN49792.1 | SHN61435.1 | SAMN02745193_00409 | SAMN02745193_02268 | Thioredoxin; Belongs to the thioredoxin family. | Peroxiredoxin (alkyl hydroperoxide reductase subunit C); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | 0.412 |
SHN49792.1 | SHN61636.1 | SAMN02745193_00409 | SAMN02745193_02314 | Thioredoxin; Belongs to the thioredoxin family. | PAS domain S-box-containing protein. | 0.536 |
SHN49792.1 | fur | SAMN02745193_00409 | SAMN02745193_00803 | Thioredoxin; Belongs to the thioredoxin family. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.595 |
SHN52510.1 | SHN52518.1 | SAMN02745193_00802 | SAMN02745193_00804 | Transcriptional regulator, MucR family. | Lyso-ornithine lipid acyltransferase. | 0.549 |
SHN52510.1 | fur | SAMN02745193_00802 | SAMN02745193_00803 | Transcriptional regulator, MucR family. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.549 |
SHN52518.1 | SHN52510.1 | SAMN02745193_00804 | SAMN02745193_00802 | Lyso-ornithine lipid acyltransferase. | Transcriptional regulator, MucR family. | 0.549 |
SHN52518.1 | fur | SAMN02745193_00804 | SAMN02745193_00803 | Lyso-ornithine lipid acyltransferase. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.800 |
SHN53172.1 | SHN49792.1 | SAMN02745193_00952 | SAMN02745193_00409 | 1-Cys peroxiredoxin. | Thioredoxin; Belongs to the thioredoxin family. | 0.412 |
SHN53172.1 | SHN57483.1 | SAMN02745193_00952 | SAMN02745193_01647 | 1-Cys peroxiredoxin. | Glutamate synthase (NADH) large subunit. | 0.461 |
SHN53172.1 | fur | SAMN02745193_00952 | SAMN02745193_00803 | 1-Cys peroxiredoxin. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.617 |
SHN57483.1 | SHN49792.1 | SAMN02745193_01647 | SAMN02745193_00409 | Glutamate synthase (NADH) large subunit. | Thioredoxin; Belongs to the thioredoxin family. | 0.797 |
SHN57483.1 | SHN53172.1 | SAMN02745193_01647 | SAMN02745193_00952 | Glutamate synthase (NADH) large subunit. | 1-Cys peroxiredoxin. | 0.461 |
SHN57483.1 | SHN61435.1 | SAMN02745193_01647 | SAMN02745193_02268 | Glutamate synthase (NADH) large subunit. | Peroxiredoxin (alkyl hydroperoxide reductase subunit C); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | 0.461 |
SHN57483.1 | SHN61636.1 | SAMN02745193_01647 | SAMN02745193_02314 | Glutamate synthase (NADH) large subunit. | PAS domain S-box-containing protein. | 0.556 |
SHN57483.1 | fur | SAMN02745193_01647 | SAMN02745193_00803 | Glutamate synthase (NADH) large subunit. | Ferric uptake regulator, Fur family; Belongs to the Fur family. | 0.828 |
SHN57483.1 | polA | SAMN02745193_01647 | SAMN02745193_01608 | Glutamate synthase (NADH) large subunit. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.416 |
SHN57483.1 | rpoA | SAMN02745193_01647 | SAMN02745193_02187 | Glutamate synthase (NADH) large subunit. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.421 |
SHN61435.1 | SHN49792.1 | SAMN02745193_02268 | SAMN02745193_00409 | Peroxiredoxin (alkyl hydroperoxide reductase subunit C); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. | Thioredoxin; Belongs to the thioredoxin family. | 0.412 |
page 1 of 3