STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN53577.1Uncharacterized protein, PEP-CTERM system associated. (547 aa)    
Predicted Functional Partners:
SHN53571.1
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily.
    
  0.883
SHN53574.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
    
  0.878
SHN53566.1
Polysaccharide export outer membrane protein.
    
  0.768
SHN53582.1
Putative secretion ATPase, PEP-CTERM locus subfamily.
       0.760
SHN53589.1
Polysaccharide deacetylase family protein, PEP-CTERM locus subfamily.
       0.760
SHN53594.1
FemAB-related protein, PEP-CTERM system-associated.
       0.760
SHN53599.1
Sugar transferase, PEP-CTERM/EpsH1 system associated.
       0.760
SHN53604.1
Exosortase A.
       0.760
SHN53606.1
Asparagine synthase (glutamine-hydrolysing).
       0.738
SHN56853.1
UDP-N-acetylglucosamine 2-epimerase (non-hydrolysing); Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
    
  0.586
Your Current Organism:
Porphyrobacter sanguineus
NCBI taxonomy Id: 198312
Other names: ATCC 25659, Agrobacterium sanguineum, DSM 11032, IAM 12620, ICPB 4167, IFO 15763, JCM 20691, NBRC 15763, P. sanguineus, strain A91
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