STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN55127.1Conjugative transfer pilus assembly protein TraH. (478 aa)    
Predicted Functional Partners:
SHN55109.1
Conjugal transfer pilus assembly protein TraU.
 
   
 0.959
SHN55070.1
Conjugal transfer pilus assembly protein TraE.
 
   
 0.954
SHN55111.1
Conjugal transfer pilus assembly protein TrbC.
 
   
 0.954
SHN55117.1
Conjugal transfer mating pair stabilization protein TraN.
 
   
 0.954
SHN55078.1
Conjugal transfer pilus assembly protein TraB.
 
     0.952
SHN55099.1
Conjugal transfer pilin signal peptidase TrbI.
 
     0.952
SHN55104.1
Conjugal transfer pilus assembly protein TraW.
 
     0.952
SHN55120.1
Conjugal transfer pilus assembly protein TraF.
 
     0.952
SHN55081.1
Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
     0.950
SHN55133.1
Conjugal transfer mating pair stabilization protein TraG.
 
   
 0.950
Your Current Organism:
Porphyrobacter sanguineus
NCBI taxonomy Id: 198312
Other names: ATCC 25659, Agrobacterium sanguineum, DSM 11032, IAM 12620, ICPB 4167, IFO 15763, JCM 20691, NBRC 15763, P. sanguineus, strain A91
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