STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN56252.1Hypothetical protein. (288 aa)    
Predicted Functional Partners:
SHN56254.1
Fe-S-cluster-containing dehydrogenase component.
 
     0.952
SHN56245.1
Cytochrome c3.
 
     0.951
cpdA
3',5'-cyclic AMP phosphodiesterase CpdA; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes.
 
     0.867
SHN56258.1
Cytochrome c-type biogenesis protein CcmH.
 
     0.837
SHN56224.1
Cytochrome c554 and c-prime.
 
     0.802
SHN56229.1
Uncharacterized conserved protein GlcG, DUF336 family.
 
     0.802
SHN56233.1
Hypothetical protein.
 
     0.802
SHN56236.1
LVIVD repeat-containing protein.
 
     0.800
SHN57562.1
Transcriptional regulator, AraC family.
  
     0.741
SHN56210.1
CHAT domain-containing protein.
  
     0.734
Your Current Organism:
Porphyrobacter sanguineus
NCBI taxonomy Id: 198312
Other names: ATCC 25659, Agrobacterium sanguineum, DSM 11032, IAM 12620, ICPB 4167, IFO 15763, JCM 20691, NBRC 15763, P. sanguineus, strain A91
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