STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN59781.1TonB-dependent receptor. (943 aa)    
Predicted Functional Partners:
SHN59775.1
3-phytase.
 
     0.949
SHN59773.1
Hypothetical protein.
 
     0.790
SHN59768.1
Putative Ca2+/H+ antiporter, TMEM165/GDT1 family.
       0.711
SHN51772.1
Hypothetical protein.
 
     0.675
SHN65337.1
Iron complex outermembrane recepter protein.
  
     0.655
SHN48680.1
TonB-dependent Receptor Plug Domain.
  
     0.601
SHN59843.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.598
SHN50987.1
Iron complex outermembrane recepter protein.
  
  
  0.577
SHN61967.1
Uncharacterized conserved protein, DUF885 familyt.
  
     0.569
SHN54982.1
Iron complex outermembrane recepter protein.
  
  
  0.568
Your Current Organism:
Porphyrobacter sanguineus
NCBI taxonomy Id: 198312
Other names: ATCC 25659, Agrobacterium sanguineum, DSM 11032, IAM 12620, ICPB 4167, IFO 15763, JCM 20691, NBRC 15763, P. sanguineus, strain A91
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