STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN60429.1Transcriptional regulator, XRE family. (192 aa)    
Predicted Functional Partners:
SHN60426.1
Hypothetical protein.
 
    0.876
SHN48282.1
MraZ protein; Belongs to the MraZ family.
  
 
   0.770
SHN53074.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.768
SHN53768.1
Predicted secreted protein.
  
     0.767
SHN52863.1
Hypothetical protein.
  
     0.764
SHN54137.1
Patatin-related protein.
  
     0.764
SHN58418.1
Tetratricopeptide repeat-containing protein.
  
     0.764
SHN49923.1
Hypothetical protein.
  
     0.762
SHN56477.1
Hypothetical protein.
  
     0.762
SHN64351.1
Hypothetical protein.
  
  
  0.759
Your Current Organism:
Porphyrobacter sanguineus
NCBI taxonomy Id: 198312
Other names: ATCC 25659, Agrobacterium sanguineum, DSM 11032, IAM 12620, ICPB 4167, IFO 15763, JCM 20691, NBRC 15763, P. sanguineus, strain A91
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