STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSZ78184.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)    
Predicted Functional Partners:
OSZ78183.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.985
surE
5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
       0.773
OSZ81783.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.738
OSZ78011.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.730
OSZ78185.1
Short chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.730
OSZ79395.1
Gliding motility-associated ABC transporter permease subunit GldF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.730
OSZ78009.1
Nitrous oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.720
OSZ78008.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.690
OSZ78007.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.646
atpD
F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.640
Your Current Organism:
Chitinophagaceae bacterium IBVUCB1
NCBI taxonomy Id: 1985173
Other names: C. bacterium IBVUCB1
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