STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSZ78435.1Rhomboid family intramembrane serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)    
Predicted Functional Partners:
rlmH
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.734
OSZ82137.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.698
tatA
Hypothetical protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.593
OSZ79621.1
Twin-arginine translocase TatA/TatE family subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.593
OSZ82722.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.527
OSZ78768.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.527
OSZ78769.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.527
OSZ79425.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.527
OSZ81738.1
Band 7 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.463
OSZ82505.1
Band 7 protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.463
Your Current Organism:
Chitinophagaceae bacterium IBVUCB1
NCBI taxonomy Id: 1985173
Other names: C. bacterium IBVUCB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.