OSZ79412.1 protein (Chitinophagaceae bacterium IBVUCB1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OSZ79412.1

Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)

Predicted Functional Partners:

OSZ79413.1

0.591

OSZ82019.1

0.553

OSZ79595.1

0.459

OSZ79483.1

0.449

OSZ79414.1

0.411

OSZ77960.1

0.401

Your Current Organism:

Chitinophagaceae bacterium IBVUCB1

NCBI taxonomy Id: 1985173
Other names: C. bacterium IBVUCB1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OSZ77960.1	OSZ79412.1	CAP35_06740	CAP35_14510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
OSZ79412.1	OSZ77960.1	CAP35_14510	CAP35_06740	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
OSZ79412.1	OSZ79413.1	CAP35_14510	CAP35_14515	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
OSZ79412.1	OSZ79414.1	CAP35_14510	CAP35_14520	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.411
OSZ79412.1	OSZ79483.1	CAP35_14510	CAP35_14900	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
OSZ79412.1	OSZ79595.1	CAP35_14510	CAP35_15500	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.459
OSZ79412.1	OSZ82019.1	CAP35_14510	CAP35_01745	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartokinase family.	0.553
OSZ79413.1	OSZ79412.1	CAP35_14515	CAP35_14510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
OSZ79413.1	OSZ79414.1	CAP35_14515	CAP35_14520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.589
OSZ79414.1	OSZ79412.1	CAP35_14520	CAP35_14510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
OSZ79414.1	OSZ79413.1	CAP35_14520	CAP35_14515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
OSZ79483.1	OSZ79412.1	CAP35_14900	CAP35_14510	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
OSZ79595.1	OSZ79412.1	CAP35_15500	CAP35_14510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
OSZ82019.1	OSZ79412.1	CAP35_01745	CAP35_14510	Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartokinase family.	Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553