STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN16531.1Hypothetical protein. (268 aa)    
Predicted Functional Partners:
SDN16566.1
Hypothetical protein.
 
    0.954
SDN16591.1
Type II secretion system (T2SS), protein M subtype b.
 
     0.952
SDN16619.1
Hypothetical protein.
 
     0.952
SDN16658.1
General secretion pathway protein D; Belongs to the bacterial secretin family.
 
     0.952
SDN16744.1
Hypothetical protein.
 
     0.952
SDN16688.1
General secretion pathway protein G.
 
     0.951
SDN16714.1
General secretion pathway protein G.
 
     0.927
SDN16499.1
General secretion pathway protein E.
 
     0.839
SDN16424.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
 
     0.813
SDN16325.1
Hypothetical protein.
 
     0.782
Your Current Organism:
Pseudomonas jinjuensis
NCBI taxonomy Id: 198616
Other names: JCM 21621, KACC 10760, LMG 21316, LMG:21316, NBRC 103047, P. jinjuensis, Pseudomonas jinjuensis Kwon et al. 2003, Pseudomonas sp. KACC 10758, Pseudomonas sp. KACC 10760, Pseudomonas sp. Pss 14, Pseudomonas sp. Pss 26, strain Pss 26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.