STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN46290.1HemY protein. (413 aa)    
Predicted Functional Partners:
SDN46326.1
Uroporphyrin-3 C-methyltransferase.
 
  
 0.985
SDN46367.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
   
 0.910
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
  
 0.818
ruvB
Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
  
    0.785
lolB
Outer membrane lipoprotein LolB; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
 
     0.740
SDP15350.1
Hypothetical protein.
 
     0.662
SDP21078.1
Putative negative regulator of RcsB-dependent stress response.
 
     0.615
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
  
    0.605
SDO99548.1
Hypothetical protein.
  
     0.594
SDN46439.1
Two component transcriptional regulator, LytTR family /Two-component response regulator AlgR.
       0.564
Your Current Organism:
Pseudomonas jinjuensis
NCBI taxonomy Id: 198616
Other names: JCM 21621, KACC 10760, LMG 21316, LMG:21316, NBRC 103047, P. jinjuensis, Pseudomonas jinjuensis Kwon et al. 2003, Pseudomonas sp. KACC 10758, Pseudomonas sp. KACC 10760, Pseudomonas sp. Pss 14, Pseudomonas sp. Pss 26, strain Pss 26
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