STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN52430.1Protein of unknown function. (69 aa)    
Predicted Functional Partners:
SDN52502.1
Hypothetical protein.
 
     0.809
SDN52462.1
Cytochrome oxidase assembly protein ShyY1.
 
     0.762
SDN52529.1
Cytochrome c oxidase assembly protein subunit 15.
 
    0.684
SDP00009.1
Hypothetical protein.
  
     0.646
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
     0.589
SDP12090.1
Hypothetical protein.
  
     0.561
SDN77597.1
Anti-anti-sigma factor.
  
     0.558
SDP03940.1
Peptidoglycan-binding protein, CsiV.
  
     0.555
SDN45189.1
Cell division protein ZapB.
  
     0.554
SDP24653.1
Protein of unknown function.
  
     0.518
Your Current Organism:
Pseudomonas jinjuensis
NCBI taxonomy Id: 198616
Other names: JCM 21621, KACC 10760, LMG 21316, LMG:21316, NBRC 103047, P. jinjuensis, Pseudomonas jinjuensis Kwon et al. 2003, Pseudomonas sp. KACC 10758, Pseudomonas sp. KACC 10760, Pseudomonas sp. Pss 14, Pseudomonas sp. Pss 26, strain Pss 26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.