STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN69451.1Uncharacterized domain 1-containing protein. (151 aa)    
Predicted Functional Partners:
SDO74207.1
Hypothetical protein.
     
 0.589
SDO13832.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
  
 
 0.559
SDO13880.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
  
 
 0.553
SDO13800.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.
  
 
 0.552
SDO13855.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
  
 
 0.552
SDN48498.1
Ferredoxin-NADP reductase.
  
 
  0.547
SDN43371.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
  
 
  0.547
SDN81644.1
Vanillate O-demethylase ferredoxin subunit.
  
 
  0.547
SDN83232.1
Vanillate O-demethylase ferredoxin subunit.
  
 
  0.547
SDN93867.1
Ferredoxin-NADP reductase; Converts carnitine to trimethylamine and malic semialdehyde.
  
 
  0.547
Your Current Organism:
Pseudomonas jinjuensis
NCBI taxonomy Id: 198616
Other names: JCM 21621, KACC 10760, LMG 21316, LMG:21316, NBRC 103047, P. jinjuensis, Pseudomonas jinjuensis Kwon et al. 2003, Pseudomonas sp. KACC 10758, Pseudomonas sp. KACC 10760, Pseudomonas sp. Pss 14, Pseudomonas sp. Pss 26, strain Pss 26
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