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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN96877.1Hypothetical protein. (57 aa)    
Predicted Functional Partners:
SDN96903.1
Hypothetical protein.
       0.634
SDN96855.1
Alginate lyase.
       0.532
SDN96936.1
Anti-sigma factor ChrR, cupin superfamily.
       0.522
Your Current Organism:
Pseudomonas jinjuensis
NCBI taxonomy Id: 198616
Other names: JCM 21621, KACC 10760, LMG 21316, LMG:21316, NBRC 103047, P. jinjuensis, Pseudomonas jinjuensis Kwon et al. 2003, Pseudomonas sp. KACC 10758, Pseudomonas sp. KACC 10760, Pseudomonas sp. Pss 14, Pseudomonas sp. Pss 26, strain Pss 26
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