STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO13135.1YD repeat-containing protein. (1217 aa)    
Predicted Functional Partners:
SDO13118.1
RHS repeat-associated core domain-containing protein.
 
   
 0.941
SDO65698.1
Hypothetical protein.
  
 
 0.784
SDN76202.1
Filamentous hemagglutinin family N-terminal domain-containing protein.
  
 
 0.762
SDN26741.1
Glyoxylase, beta-lactamase superfamily II.
   
    0.746
SDP02512.1
Glyoxylase, beta-lactamase superfamily II.
   
    0.746
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
  
 
 0.714
SDN31556.1
Hypothetical protein.
  
 
 0.714
SDN26967.1
Hypothetical protein.
  
 
 0.714
SDN60817.1
Replication region DNA-binding N-term.
  
 
 0.714
SDN81170.1
Replication region DNA-binding N-term.
  
 
 0.714
Your Current Organism:
Pseudomonas jinjuensis
NCBI taxonomy Id: 198616
Other names: JCM 21621, KACC 10760, LMG 21316, LMG:21316, NBRC 103047, P. jinjuensis, Pseudomonas jinjuensis Kwon et al. 2003, Pseudomonas sp. KACC 10758, Pseudomonas sp. KACC 10760, Pseudomonas sp. Pss 14, Pseudomonas sp. Pss 26, strain Pss 26
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