STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP13340.1Protein of unknown function. (298 aa)    
Predicted Functional Partners:
SDO50271.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
   
 0.757
SDP20727.1
Peptidase family M23.
  
   
 0.756
SDO87424.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.733
SDO37793.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
   
 0.677
SDP13312.1
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
  
  
 0.583
SDO25443.1
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
    
 
 0.581
SDN13591.1
Membrane-bound lytic murein transglycosylase D.
  
 
 0.527
SDO26016.1
Flagellin FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
    
 
 0.494
SDO26035.1
Flagellar hook-associated protein 3 FlgL.
    
 
 0.494
SDO25418.1
Flagellar motor switch protein FliN/FliY; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
   
 
 0.490
Your Current Organism:
Pseudomonas jinjuensis
NCBI taxonomy Id: 198616
Other names: JCM 21621, KACC 10760, LMG 21316, LMG:21316, NBRC 103047, P. jinjuensis, Pseudomonas jinjuensis Kwon et al. 2003, Pseudomonas sp. KACC 10758, Pseudomonas sp. KACC 10760, Pseudomonas sp. Pss 14, Pseudomonas sp. Pss 26, strain Pss 26
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