STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANH96284.1Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)    
Predicted Functional Partners:
ANH96591.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
thiC
Phosphomethylpyrimidine synthase ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction.
     
 0.547
ANH98639.1
Allantoin permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the purine-cytosine permease (2.A.39) family.
  
     0.449
ANH97179.1
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the purine-cytosine permease (2.A.39) family.
  
     0.436
ANH97606.1
Cytosine deaminase; Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.425
ANH99899.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.422
ANH97760.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.418
pyrB
Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.407
Your Current Organism:
Pseudomonas koreensis
NCBI taxonomy Id: 198620
Other names: Arthrobacter sp. BDR2P1B1-M, Bacillus sp. BDR2P1B1, CCUG 51519, DSM 16610, JCM 14769, KACC 10848, LMG 21318, LMG:21318, P. koreensis, Pseudomonas koreensis Kwon et al. 2003, Pseudomonas sp. C9SED2, Pseudomonas sp. CALLA-IHBT-4, Pseudomonas sp. CRS05-R5, Pseudomonas sp. KACC 10848, Pseudomonas sp. KACC 10851, Pseudomonas sp. Ps 1-2, Pseudomonas sp. Ps 9-14, strain Ps 9-14
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