STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dadAD-amino acid dehydrogenase small subunit; Oxidative deamination of D-amino acids. (434 aa)    
Predicted Functional Partners:
hisC
Histidinol-phosphate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
  
 
  0.916
ANI00127.1
4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.909
hppD
4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.905
hisC-2
Histidinol-phosphate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
  0.901
ANH99050.1
Aromatic amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.900
ANI00709.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.876
ANI00409.1
Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family.
  
 
 0.844
ANI00708.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.824
ANI00711.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.558
ANH97565.1
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.479
Your Current Organism:
Pseudomonas koreensis
NCBI taxonomy Id: 198620
Other names: Arthrobacter sp. BDR2P1B1-M, Bacillus sp. BDR2P1B1, CCUG 51519, DSM 16610, JCM 14769, KACC 10848, LMG 21318, LMG:21318, P. koreensis, Pseudomonas koreensis Kwon et al. 2003, Pseudomonas sp. C9SED2, Pseudomonas sp. CALLA-IHBT-4, Pseudomonas sp. CRS05-R5, Pseudomonas sp. KACC 10848, Pseudomonas sp. KACC 10851, Pseudomonas sp. Ps 1-2, Pseudomonas sp. Ps 9-14, strain Ps 9-14
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