node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplC | rplD | Dda3937_04221 | Dda3937_01495 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplJ | Dda3937_04221 | Dda3937_00219 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.997 |
rplC | rplO | Dda3937_04221 | Dda3937_01510 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.998 |
rplC | rplP | Dda3937_04221 | Dda3937_01500 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplC | rplR | Dda3937_04221 | Dda3937_01507 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.998 |
rplC | rplV | Dda3937_04221 | Dda3937_01498 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
rplC | rplW | Dda3937_04221 | Dda3937_01496 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplC | rplX | Dda3937_04221 | Dda3937_04715 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | LSU ribosomal protein L24p (L26e); One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.995 |
rplC | rpmC | Dda3937_04221 | Dda3937_01501 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L29; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uL29 family. | 0.996 |
rplC | rpmD | Dda3937_04221 | Dda3937_01509 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L30; Protein involved in structural constituent of ribosome and translation. | 0.997 |
rplD | rplC | Dda3937_01495 | Dda3937_04221 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
rplD | rplJ | Dda3937_01495 | Dda3937_00219 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 50S ribosomal subunit protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.996 |
rplD | rplO | Dda3937_01495 | Dda3937_01510 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 50S ribosomal subunit protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.995 |
rplD | rplP | Dda3937_01495 | Dda3937_01500 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.997 |
rplD | rplR | Dda3937_01495 | Dda3937_01507 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 50S ribosomal subunit protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.998 |
rplD | rplV | Dda3937_01495 | Dda3937_01498 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 50S ribosomal subunit protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
rplD | rplW | Dda3937_01495 | Dda3937_01496 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 50S ribosomal subunit protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplD | rplX | Dda3937_01495 | Dda3937_04715 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | LSU ribosomal protein L24p (L26e); One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.995 |
rplD | rpmC | Dda3937_01495 | Dda3937_01501 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 50S ribosomal subunit protein L29; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uL29 family. | 0.998 |
rplD | rpmD | Dda3937_01495 | Dda3937_01509 | 50S ribosomal subunit protein L4; Forms part of the polypeptide exit tunnel. | 50S ribosomal subunit protein L30; Protein involved in structural constituent of ribosome and translation. | 0.996 |