STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ADN00535.1Lipopolysaccharide core biosynthesis glycosyl transferase kdtX; Protein involved in lipopolysaccharide core region biosynthetic process. (263 aa)    
Predicted Functional Partners:
kdtA
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
   
 0.859
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
     
 0.833
ADM97994.1
Glycosyl transferase, group 2 family protein; Protein involved in binding.
  
     0.737
rfaF
ADP-heptose:LPS heptosyltransferase II; Protein involved in (OBSOLETE) cell surface antigen activity, host-interacting, transferase activity, transferase activity, transferring glycosyl groups, lipopolysaccharide core region biosynthetic process, metabolic process and lipopolysaccharide biosynthetic process.
 
  
 0.642
wcaJ
Predicted UDP-glucose lipid carrier transferase; Protein involved in colanic acid biosynthetic process.
 
  
 0.631
lpxK
Lipid A 4'kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
   
 0.602
rfaQ
Lipopolysaccharide core biosynthesis protein; Protein involved in (OBSOLETE) cell surface antigen activity, host-interacting, transferase activity, lipopolysaccharide core region biosynthetic process and metabolic process.
 
  
 0.573
rfaD
ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding protein; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
 
  
 0.462
yfbG
Bifunctional UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily.
  
  
 0.455
waaG
UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG; Protein involved in (OBSOLETE) cell surface antigen activity, host-interacting, lipopolysaccharide core region biosynthetic process, SOS response and biosynthetic process.
 
  
 0.430
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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