Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ycfDProtein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown. (373 aa)    
Predicted Functional Partners:
yhdP
Possible exported protein; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
  
     0.587
rplP
50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.559
ycaO
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
 
   
 0.503
phoQ
Sensory histidine kinase in two-compoent regulatory system with PhoP; Protein involved in ATP binding, signal transducer activity, two-component sensor activity, transferase activity, transferring phosphorus-containing groups, protein histidine kinase activity, protein modification process, signal transduction, phosphorylation and peptidyl-histidine phosphorylation.
       0.496
yrfF
Predicted inner membrane protein; Homologous to Flagellar operon control protein umoB from Proteus mirabilis.
  
     0.465
rcsF
Predicted outer membrane protein, signal; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.425
phoP
DNA-binding response regulator in two-component regulatory system with PhoQ; PhoP is phosphorylated by the sensor-histidine kinase PhoQ in response to the extracellular Mg2+ concentration; Protein involved in transcription activator activity, two-component response regulator activity and transcription.
       0.420
hflD
Predicted lysogenization regulator; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
 
  
 0.407
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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