STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADM99315.1L-rhamnose operon transcriptional activator rhaR; Protein involved in transcription factor activity, sequence-specific DNA binding, DNA binding, transcription, regulation of transcription, DNA-dependent and regulation of transcription. (277 aa)    
Predicted Functional Partners:
ADM99317.1
Hypothetical protein.
 
     0.821
vfmE
VfmE belongs to the AraC family of transcriptional regulators; Protein involved in transcription factor activity, sequence-specific DNA binding, DNA binding, transcription, regulation of transcription, DNA-dependent, metabolism by symbiont of substance in host, regulation of transcription and pathogenesis.
  
     0.743
ADM99316.1
Branched-chain amino acid transport protein AzlC; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
 
     0.722
rhaR
DNA-binding protein transcriptional activator, L-rhamnose-binding protein; Activates expression of the rhaSR operon in response to L- rhamnose.
 
 
 0.704
ADM98045.1
Transcriptional regulator; Protein involved in (DEPRECATED) molecular function unknown, transcription factor activity, sequence-specific DNA binding, DNA binding, (DEPRECATED) biological process unknown, regulation of transcription, DNA-dependent and regulation of transcription.
  
     0.651
mnmC
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
     
 0.602
araC
DNA-binding transcriptional dual regulator; Interacts with L-arabinose which is an inducer; interacts with D-fucose which is an anti-inducer; Protein involved in transcription activator activity, transcription repressor activity, transcription factor activity, sequence-specific DNA binding, DNA binding, carbohydrate catabolic process, transcription, regulation of transcription, DNA-dependent and regulation of transcription.
  
     0.544
ADM97722.1
Transcriptional regulator, AraC family; Protein involved in transcription factor activity, sequence-specific DNA binding, DNA binding, regulation of transcription, DNA-dependent, transcription and regulation of transcription.
  
   0.542
ADN00015.1
Putative transcriptional regulator; Protein involved in transcription factor activity, sequence-specific DNA binding, DNA binding, transcription, regulation of transcription, DNA-dependent and regulation of transcription.
  
     0.529
ADM97933.1
Transcriptional regulator, AraC family; Protein involved in transcription factor activity, sequence-specific DNA binding, DNA binding, transcription, regulation of transcription, DNA-dependent and regulation of transcription.
  
     0.517
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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