STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ganAPeriplasmic 1,4-beta-endogalactanase; Protein involved in (DEPRECATED) molecular function unknown, glucosidase activity, catalytic activity, cation binding, (DEPRECATED) biological process unknown and carbohydrate metabolic process. (399 aa)    
Predicted Functional Partners:
ganB
1,4-beta-exogalactanase; Protein involved in catalytic activity, cation binding, carbohydrate catabolic process and carbohydrate metabolic process.
 
  
 0.917
ganE
Periplasmic binding protein of galactan transport system; Protein involved in (OBSOLETE) ATP-binding cassette (ABC) transporter activity, transporter activity and transport.
 
  
 0.875
ganG
Galactan ABC transport system, permease component; Protein involved in (OBSOLETE) ATP-binding cassette (ABC) transporter activity, transporter activity and transport.
 
  
 0.875
ganF
Galactan ABC transport system, permease component; Protein involved in (OBSOLETE) ATP-binding cassette (ABC) transporter activity, transporter activity and transport.
 
    0.864
xynA
Xylanase; Protein involved in catalytic activity, cation binding, glucosylceramidase activity, endo-1,4-beta-xylanase activity, carbohydrate catabolic process, glucose metabolic process, polysaccharide catabolic process, metabolism by symbiont of substance in host, carbohydrate metabolic process, sphingolipid metabolic process and lysosome organization; Belongs to the glycosyl hydrolase 30 family.
  
   
 0.728
pelL
Pectate lyase pelL; Presents an endo-cleaving activity on polygalacturonate or partially methylated pectin. Is effective in the maceration of plant tissue, and has an important role in soft-rot disease. Is 280-fold less active against polygalacturonate than the major pectate lyase PelB. When assayed on polygalacturonate, PelL releases oligogalacturonates of different sizes; upon prolonged incubation, PelL degrades the primary products to unsaturated tetramer and pentamer in addition to unsaturated dimer and trimer. When assayed on oligogalacturonates (degrees of polymerization of 2 to [...]
  
    0.681
pelC
Pectate lyase C; PelC is secretd by the Out secretion system; Protein involved in polysaccharide catabolic process, carbohydrate catabolic process and pathogenesis.
  
   
 0.667
ADM98300.1
Pectate lyase; Protein involved in carbohydrate catabolic process and polysaccharide catabolic process.
  
   
 0.662
pelB
Pectate lyase B; PelB is secreted by the Out secretion system; Protein involved in pectate lyase activity, polysaccharide catabolic process, interaction with host via protein secreted by type II secretion system, metabolism by symbiont of substance in host and pathogenesis.
  
   
 0.662
ADN00246.1
Protein involved in mannan endo-1,4-beta-mannosidase activity, catalytic activity, cation binding, polysaccharide catabolic process, substituted mannan metabolic process and carbohydrate metabolic process; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.655
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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