STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lfeWMandelate racemase/muconate lactonizing enzyme family protein; Protein involved in (DEPRECATED) molecular function unknown, catalytic activity, (DEPRECATED) biological process unknown and metabolic process; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (448 aa)    
Predicted Functional Partners:
gudD
D-glucarate dehydratase; Protein involved in catalytic activity, carbohydrate catabolic process and metabolic process.
 
  
  0.957
garL
alpha-dehydro-beta-deoxy-D-glucarate aldolase; Catalyzes the reversible retro-aldol cleavage of both 5-keto- 4-deoxy-D-glucarate and 2-keto-3-deoxy-D-glucarate to pyruvate and tartronic semialdehyde; Belongs to the HpcH/HpaI aldolase family. KDGluc aldolase subfamily.
 
 
 0.943
garD
(D)-galactarate dehydrogenase; Catalyzes the dehydration of galactarate to form 5-dehydro-4- deoxy-D-glucarate.
 
  
 0.925
gudX
D-glucarate dehydratase-related protein; Protein involved in (DEPRECATED) molecular function unknown, catalytic activity, (DEPRECATED) biological process unknown and metabolic process.
 
     0.630
lfeR
Putative transcriptional regulator; Protein involved in transcription repressor activity, transcription factor activity, carbohydrate catabolic process, transcription and regulation of transcription, DNA-dependent.
 
    0.608
ycjG
Muconate cycloisomerase; Protein involved in catalytic activity and metabolic process.
  
     0.419
ADM96487.1
Protein involved in (OBSOLETE) endopeptidase Clp activity and proteolysis; Belongs to the peptidase S14 family.
  
     0.411
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.