STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kikAIncN plasmid KikA protein; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown. (100 aa)    
Predicted Functional Partners:
virB11
Type IV secretion system protein; Part of the Type IV secretion system. Belongs to the GSP E family.
     
 0.741
virB8
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB8).
       0.672
virB9
VirB9; Forms the bulk of type IV secretion complex that spans outer membrane and periplasm.
       0.655
virB10
Inner membrane protein forms channel for type IV secretion of T-DNA complex (VirB10); Protein involved in unidirectional conjugation.
       0.653
virB7
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
       0.639
virB4
Type IV secretion system protein VirB4; N-terminal region has similarity to VirB3, C-terminal region has similarity to VirB4; Protein involved in ATP binding.
     
 0.587
virB2
Major pilus subunit of type IV secretion complex (VirB2).
     
 0.558
ADM99165.1
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
       0.550
virB1
VirB1; Bores hole in peptidoglycan layer allowing type IV secretion complex assembly to occur; Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
     
 0.547
virB5
Minor pilin of type IV secretion complex (VirB5).
       0.466
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.