STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lffRMaltose operon transcriptional repressor MalR, LacI family; Protein involved in transcription repressor activity, transcription factor activity, transcription and regulation of transcription, DNA-dependent. (326 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, large subunit; Protein involved in glutamate synthase activity, oxidoreductase activity, catalytic activity, glutamate biosynthetic process, nitrogen compound metabolic process and metabolic process.
    
 
 0.671
ADM99491.1
Oxidoreductase; Protein involved in (DEPRECATED) molecular function unknown, oxidoreductase activity, (DEPRECATED) biological process unknown, (OBSOLETE) electron transport and metabolic process.
 
     0.576
lffE
Protein involved in (DEPRECATED) molecular function unknown and (DEPRECATED) biological process unknown.
  
    0.531
lfgR
Transcriptional regulator, LacI family; Protein involved in transcription factor activity, regulation of transcription, DNA-dependent and transcription.
  
   
0.490
yegT
Nucleoside permease nupG; Protein involved in transporter activity, nucleoside transmembrane transporter activity, transport and nucleoside transport.
       0.481
lfbR
Transcriptional regulator, LacI family; Protein involved in transcription factor activity, transcription and regulation of transcription, DNA-dependent.
  
   
0.466
lfeR
Putative transcriptional regulator; Protein involved in transcription repressor activity, transcription factor activity, carbohydrate catabolic process, transcription and regulation of transcription, DNA-dependent.
  
   
0.430
ascG
AscBF operon repressor; AscG belongs to the LacI family of transcriptional regulators; Protein involved in transcription repressor activity, transcription factor activity, carbohydrate catabolic process, transcription and regulation of transcription, DNA-dependent.
  
   
0.402
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.