STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaBRhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family. (490 aa)    
Predicted Functional Partners:
rhaA
Protein involved in L-rhamnose isomerase activity, manganese ion binding, carbohydrate catabolic process and rhamnose metabolic process.
 
 
 0.998
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. Belongs to the aldolase class II family. RhaD subfamily.
 
 
 0.996
yiiL
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.939
rhaR
DNA-binding protein transcriptional activator, L-rhamnose-binding protein; Activates expression of the rhaSR operon in response to L- rhamnose.
 
  
 0.742
ganB
1,4-beta-exogalactanase; Protein involved in catalytic activity, cation binding, carbohydrate catabolic process and carbohydrate metabolic process.
 
    0.536
rhaS
DNA-binding protein transcriptional activator, L-rhamnose-binding protein; Activates expression of the rhaBAD and rhaT operons.
 
   
 0.499
ptsH
Phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr); Protein involved in sugar:hydrogen symporter activity, carbohydrate catabolic process, protein modification process, phosphoenolpyruvate-dependent sugar phosphotransferase system and transport.
    
 
 0.478
araD
L-ribulose-5-phosphate 4-epimerase; Protein involved in metal ion binding, zinc ion binding, L-ribulose-phosphate 4-epimerase activity, carbohydrate catabolic process and L-arabinose catabolic process.
 
  
 0.461
fruA
PTS system, fructose-specific IIB component / PTS system, fructose-specific IIC component; Protein involved in sugar:hydrogen symporter activity, carbohydrate catabolic process and phosphoenolpyruvate-dependent sugar phosphotransferase system.
     
 0.457
rspB
Starvation sensing protein rspB; Protein involved in zinc ion binding, oxidoreductase activity and response to starvation.
 
  
 0.439
Your Current Organism:
Dickeya dadantii
NCBI taxonomy Id: 198628
Other names: D. dadantii 3937, Dickeya dadantii 3937, Dickeya dadantii str. 3937, Dickeya dadantii strain 3937, Erwinia chrysanthemi str. 3937, Pectobacterium chrysanthemi str. 3937
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